edu.stanford.nlp.dbm
Class USPDI

java.lang.Object
  |
  +--java.util.AbstractCollection
        |
        +--java.util.AbstractList
              |
              +--edu.stanford.nlp.dbm.AbstractDataCollection
                    |
                    +--edu.stanford.nlp.dbm.FileDataCollection
                          |
                          +--edu.stanford.nlp.dbm.USPDI

All Implemented Interfaces:

Collection, DataCollection, List

public class USPDI

extends FileDataCollection

A DataCollection where each Data Item is a LocusLink document about a gene.

Field Summary

Fields inherited from class edu.stanford.nlp.dbm.FileDataCollection

datamatrix, numdocs

Fields inherited from class edu.stanford.nlp.dbm.AbstractDataCollection

data, features, name

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

USPDI()
Creates an empty LocusLink document collection

USPDI(ArrayList drugNames)
Creates a USPDI document collection given an ArrayList of drug names

Method Summary

Iterator	fileIterator() returns an iterator over documents in the document collection
void	populate() same as FileDataCollection.populate, but puts a minimum length restriction on documents that it puts in the document collection.

Methods inherited from class edu.stanford.nlp.dbm.FileDataCollection

add, dataMatrix, features, set, set, set, setDefaults, setDefaults

Methods inherited from class edu.stanford.nlp.dbm.AbstractDataCollection

get, name, size, toString, toXMLString

Methods inherited from class java.util.AbstractList

add, add, addAll, clear, equals, hashCode, indexOf, iterator, lastIndexOf, listIterator, listIterator, remove, removeRange, set, subList

Methods inherited from class java.util.AbstractCollection

addAll, contains, containsAll, isEmpty, remove, removeAll, retainAll, toArray, toArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, subList, toArray, toArray

Constructor Detail

USPDI

public USPDI()

Creates an empty LocusLink document collection

USPDI

public USPDI(ArrayList drugNames)

Creates a USPDI document collection given an ArrayList of drug names

Method Detail

populate

public void populate()

same as FileDataCollection.populate, but puts a minimum length restriction on documents that it puts in the document collection.

Overrides:

populate in class FileDataCollection

fileIterator

public Iterator fileIterator()

returns an iterator over documents in the document collection

Specified by:

fileIterator in class FileDataCollection