edu.stanford.nlp.dbm
Class LocusLink

java.lang.Object
  |
  +--java.util.AbstractCollection
        |
        +--java.util.AbstractList
              |
              +--edu.stanford.nlp.dbm.AbstractDataCollection
                    |
                    +--edu.stanford.nlp.dbm.FileDataCollection
                          |
                          +--edu.stanford.nlp.dbm.LocusLink

All Implemented Interfaces:

Collection, DataCollection, List

public class LocusLink

extends FileDataCollection

A DataCollection where each Data Item is a LocusLink document about a gene.

Field Summary

Fields inherited from class edu.stanford.nlp.dbm.FileDataCollection

datamatrix, numdocs

Fields inherited from class edu.stanford.nlp.dbm.AbstractDataCollection

data, features, name

Fields inherited from class java.util.AbstractList

modCount

Constructor Summary

LocusLink()
Creates an empty LocusLink document collection

LocusLink(ArrayList locusIDs)
Creates a LocusLink document collection given an ArrayList of LocusLink IDs

Method Summary

Iterator	fileIterator() returns an iterator over documents in the document collection
void	populate() same as FileDataCollection.populate, but puts a minimum length restriction on documents that it puts in the document collection.

Methods inherited from class edu.stanford.nlp.dbm.FileDataCollection

add, dataMatrix, features, set, set, set, setDefaults, setDefaults

Methods inherited from class edu.stanford.nlp.dbm.AbstractDataCollection

get, name, size, toString, toXMLString

Methods inherited from class java.util.AbstractList

add, add, addAll, clear, equals, hashCode, indexOf, iterator, lastIndexOf, listIterator, listIterator, remove, removeRange, set, subList

Methods inherited from class java.util.AbstractCollection

addAll, contains, containsAll, isEmpty, remove, removeAll, retainAll, toArray, toArray

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.List

add, add, addAll, addAll, clear, contains, containsAll, equals, hashCode, indexOf, isEmpty, iterator, lastIndexOf, listIterator, listIterator, remove, remove, removeAll, retainAll, set, subList, toArray, toArray

Constructor Detail

LocusLink

public LocusLink()

Creates an empty LocusLink document collection

LocusLink

public LocusLink(ArrayList locusIDs)

Creates a LocusLink document collection given an ArrayList of LocusLink IDs

Method Detail

populate

public void populate()

same as FileDataCollection.populate, but puts a minimum length restriction on documents that it puts in the document collection.

Overrides:

populate in class FileDataCollection

fileIterator

public Iterator fileIterator()

returns an iterator over documents in the document collection

Specified by:

fileIterator in class FileDataCollection